Publications

2024

Leaf Angle Estimation using Mask R-CNN and LETR Vision Transformer
Leaf Angle Estimation using Mask R-CNN and LETR Vision Transformer
Venkat Margapuri, Prapti Thapaliya, Trevor Rife
2024 Anaheim, California July 28-31, 2024  ·  28 Jul 2024  ·  doi:10.13031/aim.202400960
Toward an open‐source 3D‐printable laboratory
Toward an open‐source 3D‐printable laboratory
Mason C. McNair, Sebastian C. Cocioba, Peter Pietrzyk, Trevor W. Rife
Applications in Plant Sciences  ·  18 Jan 2024  ·  doi:10.1002/aps3.11562
Data
3d-printing

2023

A Simplified Microscopy Technique to Rapidly Characterize Individual Fiber Traits in Cotton
A Simplified Microscopy Technique to Rapidly Characterize Individual Fiber Traits in Cotton
Quinn LaFave, Shalini P. Etukuri, Chaney L. Courtney, Neha Kothari, Trevor W. Rife, Christopher A. Saski
Methods and Protocols  ·  03 Oct 2023  ·  doi:10.3390/mps6050092
deep-learning

2022

Breedbase: a digital ecosystem for modern plant breeding
Breedbase: a digital ecosystem for modern plant breeding
Nicolas Morales, Alex C Ogbonna, Bryan J Ellerbrock, Guillaume J Bauchet, Titima Tantikanjana, …, Bert de Boeck, Hugo Campos, Rony Swennen, Jeremy D Edwards, Lukas A Mueller
G3 Genes|Genomes|Genetics  ·  06 Apr 2022  ·  doi:10.1093/g3journal/jkac078
Source
database
Intercross: An Android app for plant breeding and genetics cross management
Intercross: An Android app for plant breeding and genetics cross management
Trevor W. Rife, Chaney Courtney, Guillaume Bauchet, Mitchell Neilsen, Jesse A. Poland
Crop Science  ·  08 Feb 2022  ·  doi:10.1002/csc2.20702
Source
App
phenoapps plant-breeding

2021

Prospector: A mobile application for portable, high‐throughput near‐infrared spectroscopy phenotyping
Prospector: A mobile application for portable, high‐throughput near‐infrared spectroscopy phenotyping
Trevor W. Rife, Chaney Courtney, Jenna Hershberger, Michael Allen Gore, Mitchell Neilsen, Jesse Poland
The Plant Phenome Journal  ·  01 Jan 2021  ·  doi:10.1002/ppj2.20024
Source
App
phenoapps nir

2020

The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding
The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding
Liangliang Gao, Dal-Hoe Koo, Philomin Juliana, Trevor Rife, Daljit Singh, …, Ravi Singh, Nils Stein, Martin Mascher, Allan Fritz, Jesse Poland
Theoretical and Applied Genetics  ·  12 Nov 2020  ·  doi:10.1007/s00122-020-03712-y
wheat

2019

A Field‐Based Analysis of Genetic Improvement for Grain Yield in Winter Wheat Cultivars Developed in the US Central Plains from 1992 to 2014
A Field‐Based Analysis of Genetic Improvement for Grain Yield in Winter Wheat Cultivars Developed in the US Central Plains from 1992 to 2014
Trevor W. Rife, Robert A. Graybosch, Jesse A. Poland
Crop Science  ·  01 May 2019  ·  doi:10.2135/cropsci2018.01.0073
wheat plant-breeding
BrAPI—an application programming interface for plant breeding applications
BrAPI—an application programming interface for plant breeding applications
Peter Selby, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, …, Gordon Stephen, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden
Bioinformatics  ·  23 Mar 2019  ·  doi:10.1093/bioinformatics/btz190
Source
api

2018

Genomic Analysis and Prediction within a US Public Collaborative Winter Wheat Regional Testing Nursery
Genomic Analysis and Prediction within a US Public Collaborative Winter Wheat Regional Testing Nursery
Trevor W. Rife, Robert A. Graybosch, Jesse A. Poland
The Plant Genome  ·  01 Nov 2018  ·  doi:10.3835/plantgenome2018.01.0004
wheat plant-breeding
QTL mapping of pre-harvest sprouting resistance in a white wheat cultivar Danby
QTL mapping of pre-harvest sprouting resistance in a white wheat cultivar Danby
Mingqin Shao, Guihua Bai, Trevor W. Rife, Jesse Poland, Meng Lin, …, Tadele Kumssa, Allan Fritz, Harold Trick, Yan Li, Guorong Zhang
Theoretical and Applied Genetics  ·  02 Jun 2018  ·  doi:10.1007/s00122-018-3107-5
wheat pre-harvest-sprouting

2016

Quantifying variety‐specific heat resistance and the potential for adaptation to climate change
Quantifying variety‐specific heat resistance and the potential for adaptation to climate change
Jesse Tack, Andrew Barkley, Trevor W. Rife, Jesse A. Poland, Lawton Lanier Nalley
Global Change Biology  ·  10 May 2016  ·  doi:10.1111/gcb.13163
climate-change wheat

2015

Spiked GBS: a unified, open platform for single marker genotyping and whole-genome profiling
Spiked GBS: a unified, open platform for single marker genotyping and whole-genome profiling
Trevor W Rife, Shuangye Wu, Robert L Bowden, Jesse A Poland
BMC Genomics  ·  28 Mar 2015  ·  doi:10.1186/s12864-015-1404-9
genotyping gbs

2014

Field Book: An Open‐Source Application for Field Data Collection on Android
Field Book: An Open‐Source Application for Field Data Collection on Android
Trevor W. Rife, Jesse A. Poland
Crop Science  ·  01 Jul 2014  ·  doi:10.2135/cropsci2013.08.0579
Source
App
phenoapps plant-breeding

2012

Genotyping‐by‐Sequencing for Plant Breeding and Genetics
Genotyping‐by‐Sequencing for Plant Breeding and Genetics
Jesse A. Poland, Trevor W. Rife
The Plant Genome  ·  01 Nov 2012  ·  doi:10.3835/plantgenome2012.05.0005
genotyping review gbs